DNA Damage Atlas


GSM3714875-END_seq_PB_LIG4_7_5h_TIME_COURSE




Basic Information

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Sample ID:   

SRR8870069


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

7.5hrs


Treatment Dose:   

50uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

20.5173


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714883-END_seq_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.011237



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389937511290106781787.98-
chr214717713214717917614717794286.9965+
chrX14464479214464653414464570852.6505+
chr1633820111338217933382092736.9981+
chr249726452497281424972743735.315+
chr712246991912247125012247073931.9698-
chr873319330733198697331966431.6622+
chr162703916273522627242631.22+
chr499234393992362319923515330.4002-
chr1727534081275359382753483830.0544-
Download the Full Peak List



Motif Analysis

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