DNA Damage Atlas


GSM3714876-END_seq_PB_LIG4_12_5h_TIME_COURSE




Basic Information

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Sample ID:   

SRR8870070


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

12.5hrs


Treatment Dose:   

50uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

20.7259


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714883-END_seq_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.01541



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389985911241106782346.93-
chr2147176889147179042147177811108.65-
chrX14464462414464666114464570848.7562+
chr1633819992338219343382080645.215-
chr162700156273450627242634.9396+
chr499234404992362159923533631.3667+
chr983384334833869318338557630.9074-
chr249725987497282114972743729.7637+
chr712246989712247146912247073928.5322-
chr1584465906844680778446710223.9064+
Download the Full Peak List



Motif Analysis

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