DNA Damage Atlas


GSM3714877-END_seq_ExoT_PB_LIG4_0_5h_TIME_COURSE




Basic Information

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Sample ID:   

SRR8870071


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

0.5hr


Treatment Dose:   

50uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo T


Cell Phase:   

G1


Spike-in Intensity:   

180.508


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714884-END_seq_ExoT_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.001761



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr7104427849104428217104428066245.058-
chr13757301197573032575730123239.407+
chr14825278898252808982528089223.575-
chr3957724259577262995772629221.378-
chr12970613029706190297061772212.772-
chr3379786083797886137978608206.35+
chr10111725978111726180111726180160.556-
chr7130389962130390195130390186149.778-
chr8119783468119783668119783668148.893-
chr2147177133147178550147177928140.03+
Download the Full Peak List



Motif Analysis

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