DNA Damage Atlas


GSM3714878-END_seq_ExoT_PB_LIG4_1h_TIME_COURSE




Basic Information

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Sample ID:   

SRR8870072


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

1hr


Treatment Dose:   

50uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo T


Cell Phase:   

G1


Spike-in Intensity:   

119.252


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714884-END_seq_ExoT_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.001609



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2147177272147178728147177928466.893+
chr14825278898252808982528089446.403-
chr3379786083797886337978608391.823+
chr10111725976111726181111726180283.418-
chr7104427601104428231104428066279.263-
chr7130389958130390195130390186255.775-
chrX144645379144646067144645650243.885-
chr3585793825857961858579414241.99+
chr13757298437573032775730123197.636+
chr17799912797999155679991280190.506+
Download the Full Peak List



Motif Analysis

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