DNA Damage Atlas


GSM3714879-END_seq_ExoT_PB_LIG4_2_5h_TIME_COURSE




Basic Information

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Sample ID:   

SRR8870073


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2.5hrs


Treatment Dose:   

50uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo T


Cell Phase:   

G1


Spike-in Intensity:   

93.0111


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714884-END_seq_ExoT_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.001647



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2147177134147178705147177928535.045+
chr14825278898252814382528089268.903-
chr13757301197573043475730123218.877+
chr7104427739104428225104428068162.392-
chr2163123381631330416312628143.413-
chrX144644906144646123144645650143.329-
chr12797930177979422479793737132.678-
chr10722970437229785972297177123.664+
chr11802092498020996180209545118.63+
chrX103473714103473975103473920112.12-
Download the Full Peak List



Motif Analysis

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