DNA Damage Atlas


GSM3714880-END_seq_ExoT_PB_LIG4_5h_TIME_COURSE




Basic Information

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Sample ID:   

SRR8870074


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

5hrs


Treatment Dose:   

50uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo T


Cell Phase:   

G1


Spike-in Intensity:   

53.268


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714884-END_seq_ExoT_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.003151



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2147177033147178899147177932241.09+
chr15463132484631345346313451234.646-
chr2163121151631319316312630147.481+
chr15844662388446817284467032130.965+
chr2153346568153348024153347318116.194-
chr3117242841172450511724501109.076-
chr713038975813039019613039018674.1141-
chr118520059618520179718520132568.5745+
chr710442771210442861310442806866.8136-
chr1072296811722978417229717766.707+
Download the Full Peak List



Motif Analysis

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