DNA Damage Atlas


GSM3714881-END_seq_ExoT_PB_LIG4_7_5h_TIME_COURSE




Basic Information

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Sample ID:   

SRR8870075


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

7.5hrs


Treatment Dose:   

50uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo T


Cell Phase:   

G1


Spike-in Intensity:   

48.2239


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714884-END_seq_ExoT_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.015626



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2147176932147179406147177941202.031+
chr3128936580128936806128936788192.308-
chr1633820151338219293382095279.6539+
chr983384159833868748338561048.1223-
chr812050567712050758112050678846.2713+
chr249725747497283554972745846.2178+
chr1584465013844681958446703245.9434+
chrX14464474214464640314464564944.8343+
chr712246998612247147212247073944.1351-
chr113531212135324251353175042.2132+
Download the Full Peak List



Motif Analysis

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