DNA Damage Atlas


GSM3714882-END_seq_ExoT_PB_LIG4_12_5h_TIME_COURSE




Basic Information

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Sample ID:   

SRR8870076


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

12.5hrs


Treatment Dose:   

50uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo T


Cell Phase:   

G1


Spike-in Intensity:   

38.0654


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714884-END_seq_ExoT_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.023028



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2147176840147179521147177903165.966-
chr312893620212893680612893678876.1562-
chr1584466159844686578446703266.9765+
chr1633819933338219543382095261.8963+
chrX14464480814464648614464571155.6993+
chr983384332833872678338558354.7518-
chr249725740497283624972743551.0488+
chrX10617075410617263610617163047.753+
chr1279792606797946087979374946.3983+
chr162709486273481627237744.3921-
Download the Full Peak List



Motif Analysis

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