DNA Damage Atlas


GSM3714885-END_seq_PB_LIG4_2_5h_REVERSIBILITY




Basic Information

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Sample ID:   

SRR8870079


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2.5hrs


Treatment Dose:   

50uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

21.1821


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714883-END_seq_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.007506



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2147177050147179409147177928132.644+
chr1761380556613807586138075749.0575-
chrX22967584229677872296758746.5165+
chr1727534070275359572753483840.1094-
chr712247016912247138012247073939.9959-
chr499234577992362159923515337.088-
chr162712746273316627242633.9175+
chr543807363438086674380799432.5452-
chr463181083631827536318171630.422+
chrX11628681511628737611628716929.4403+
Download the Full Peak List



Motif Analysis

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