DNA Damage Atlas


GSM3714886-END_seq_ExoT_PB_LIG4_2_5h_REVERSIBILITY




Basic Information

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Sample ID:   

SRR8870080


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2.5hrs


Treatment Dose:   

50uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo T


Cell Phase:   

G1


Spike-in Intensity:   

58.1394


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714884-END_seq_ExoT_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.002542



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr10722970537229773572297224609.717+
chr7104427764104428217104428066513.132-
chr2147177007147179144147177928327.899+
chr2163123821631341716312630202.839+
chrY645339006453411864534109192.131-
chr7130389758130390197130390181177.614-
chr2707815317078210070782024133.022-
chr2153346369153347833153347318104.093-
chr1279792913797942357979373798.2462-
chr1410633133210633198810633147597.709+
Download the Full Peak List



Motif Analysis

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