DNA Damage Atlas


GSM3714887-END_seq_PB_LIG4_WASH_2_5h_REVERSIBILITY




Basic Information

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Sample ID:   

SRR8870081


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2.5hrs (ETO washded out)


Treatment Dose:   

50uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

37.9706


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714883-END_seq_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.006736



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2147176985147179152147177942273.13+
chr1848032849480330534803285264.6534+
chr499234449992362359923515356.2484-
chr1727534108275359162753483846.8126-
chr1279491649794928367949232844.4458+
chr1279792854797949927979373742.4901-
chr216312072163135231631263040.3775+
chr215334621015334821115334731838.9724-
chr611304616711304837611304766338.8468-
chr1729882405298836692988316238.6507+
Download the Full Peak List



Motif Analysis

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