DNA Damage Atlas


GSM3714888-END_seq_ExoT_PB_LIG4_WASH_2_5h_REVERSIBILITY




Basic Information

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Sample ID:   

SRR8870082


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2.5hrs (ETO washded out)


Treatment Dose:   

50uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo T


Cell Phase:   

G1


Spike-in Intensity:   

45.2214


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714884-END_seq_ExoT_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.003389



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2147177045147179134147177928300.663+
chr10722970157229784572297218126.36+
chr2163118361631347916312630120.655+
chr16338202983382195733820920114.829+
chr4597821695978364059783003110.26+
chr12797931757979442679793737106.275-
chr215334666115334820815334731894.7121-
chr710442755610442821810442806693.6475-
chr358654811586558175865539383.0391+
chr1174526144745271917452676282.7043-
Download the Full Peak List



Motif Analysis

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