DNA Damage Atlas


GSM3714889-END_seq_PB_LIG4_TDP2_2_5h_REVERSIBILITY




Basic Information

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Sample ID:   

SRR8870083


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2.5hrs


Treatment Dose:   

50uM


Genotype:   

Lig4-/- TDP2-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

23.9384


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714883-END_seq_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.015158



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2147177134147179482147177928155.698+
chr1621192579211932222119287183.7749+
chr1829558826295590552955885366.0587+
chr113531286135321041353175260.5771+
chr1111165265711165363111165298659.2875-
chr956223457562240655622366257.1776-
chr111945793611945890611945838446.0861-
chr811978306011978392511978366844.6738-
chr1727534202275358932753483844.5285-
chr113672630313672762913672678142.4156+
Download the Full Peak List



Motif Analysis

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