DNA Damage Atlas


GSM3714890-END_seq_ExoT_PB_LIG4_TDP2_2_5h_REVERSIBILITY




Basic Information

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Sample ID:   

SRR8870084


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2.5hrs


Treatment Dose:   

50uM


Genotype:   

Lig4-/- TDP2-/-


In-situ Treatment:   

Exo T


Cell Phase:   

G1


Spike-in Intensity:   

102.224


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714884-END_seq_ExoT_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.006056



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr87143295271433223714331702026.69-
chr51466664821466667081466667001340.49-
chr12935768509357735293577146657.495-
chr1100738746100738964100738953592.264-
chr5147611298147611630147611540569.904-
chr2147177047147179132147177932377.327+
chr3128936529128936808128936788354.042-
chr10299708202997103229971026302.032-
chr17531525525315277653152570249.647+
chr10948721479487236094872148248.68+
Download the Full Peak List



Motif Analysis

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