DNA Damage Atlas


GSM3714891-END_seq_PB_LIG4_TDP2_WASH_2_5h_REVERSIBILITY




Basic Information

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Sample ID:   

SRR8870085


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2.5hrs (ETO washded out)


Treatment Dose:   

50uM


Genotype:   

Lig4-/- TDP2-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

37.0864


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714883-END_seq_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.009926



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2147177134147179487147177928273.936+
chr113672630413672752313672676175.7761-
chr971840757186071718510172.1559-
chr113531178135322701353175068.6435+
chr811978297711978395511978366866.4317-
chrX11628703811628737511628716962.0826+
chr1633820195338215523382092060.5104+
chr1279792908797953887979373759.9788-
chr215334647615334821415334732559.0762-
chr1310235213410235321810235266358.8979+
Download the Full Peak List



Motif Analysis

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