DNA Damage Atlas


GSM3714892-END_seq_ExoT_PB_LIG4_TDP2_WASH_2_5h_REVERSIBILITY




Basic Information

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Sample ID:   

SRR8870086


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2.5hrs (ETO washded out)


Treatment Dose:   

50uM


Genotype:   

Lig4-/- TDP2-/-


In-situ Treatment:   

Exo T


Cell Phase:   

G1


Spike-in Intensity:   

84.8363


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714884-END_seq_ExoT_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.004776



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr51466664821466667081466667001070.7-
chr8714329527143348671433170807.346-
chr12935768449357735293577146537.915-
chr5147611298147611630147611540441.201-
chr1100738741100738964100738953439.159-
chr2147176784147179243147177932286.97+
chr10299707992997103229971026213.077-
chr3128936225128936807128936788142.19-
chrX14464481614464616114464565095.274-
chr1279793051797947777979373790.8739-
Download the Full Peak List



Motif Analysis

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