DNA Damage Atlas


GSM3714893-END_seq_PB_LIG4_EPOX_2_5h_REVERSIBILITY




Basic Information

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Sample ID:   

SRR8870087


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Epoxomicin + Etoposide


Treatment Time:   

2hrs + 2.5hrs


Treatment Dose:   

2uM Epoxomicin + 50uM Etoposide


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

19.7308


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714883-END_seq_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.009148



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2147177272147179154147177928111.011+
chr1010577422710577485310577464168.0831-
chr1621192543211933452119287152.0258+
chr499234806992361509923515339.1284-
chr458984974589857475898524335.5217-
chr1727534368275359162753483834.6661-
chr712247029412247131912247073933.3693-
chr1452103479521042485210397833.0673+
chr672185658721863687218605632.7045+
chr358654953586558705865539232.2219+
Download the Full Peak List



Motif Analysis

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