DNA Damage Atlas


GSM3714894-END_seq_ExoT_PB_LIG4_EPOX_2_5h_REVERSIBILITY




Basic Information

Manual

Sample ID:   

SRR8870088


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Epoxomicin + Etoposide


Treatment Time:   

2hrs + 2.5hrs


Treatment Dose:   

2uM Epoxomicin + 50uM Etoposide


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo T


Cell Phase:   

G1


Spike-in Intensity:   

267.736


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714884-END_seq_ExoT_PB_LIG4_NT_control


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002298



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr107229705472297845722972623194.11+
chr71044276051044282321044280682607.98-
chr34402287544023227440232161852.74-
chrY6453389764534118645341091742.85-
chr54310155243101992431018551688.88-
chrY3921247392149439214731489.1-
chr31172427911724862117244941071.51-
chr7130389768130390196130390181955.123-
chr2707816587078206270782024792.452-
chr11108112297108112650108112511576.445-
Download the Full Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab