DNA Damage Atlas


GSM3714895-END_seq_PB_LIG4_EPOX_WASH_2_5h_REVERSIBILITY




Basic Information

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Sample ID:   

SRR8870089


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Epoxomicin + Etoposide


Treatment Time:   

2hrs + 2.5hrs (ETO washded out)


Treatment Dose:   

2uM Epoxomicin + 50uM Etoposide


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

53.6609


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714883-END_seq_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.006482



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2147176911147179235147177928378.876+
chr16338202083382139933820927156.641+
chr18524575975245817452457945103.756-
chr1279491903794928007949232899.736+
chr811419305311419414611419359698.7153-
chr113672635313672719013672676194.8508-
chr337978198379788813797860889.6298+
chr113531162135320061353175287.42+
chr812050598912050715712050678887.2643+
chr1279792872797944077979373780.9118-
Download the Full Peak List



Motif Analysis

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