DNA Damage Atlas


GSM3714896-END_seq_ExoT_PB_LIG4_EPOX_WASH_2_5h_REVERSIBILITY




Basic Information

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Sample ID:   

SRR8870090


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Epoxomicin + Etoposide


Treatment Time:   

2hrs + 2.5hrs (ETO washded out)


Treatment Dose:   

2uM Epoxomicin + 50uM Etoposide


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo T


Cell Phase:   

G1


Spike-in Intensity:   

200.309


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714884-END_seq_ExoT_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.002096



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr10722969917229784572297237956.74+
chr7104427542104428219104428068795.915-
chr5431016414310199743101855675.24-
chrY645338976453411864534109646.881-
chr3117242791172461711724494589.484-
chr2147177330147179153147177932395.741+
chr3440227554402334944023216361.825-
chrY392112039216053921473257.827-
chr16191997251920042119200231188.28-
chr8714329527143334071433170184.948-
Download the Full Peak List



Motif Analysis

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