DNA Damage Atlas


GSM3714897-END_seq_PB_LIG4_WASH_0_5h_REVERSIBILITY




Basic Information

Manual

Sample ID:   

SRR8870091


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

0.5hr (ETO washded out)


Treatment Dose:   

50uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

70.6119


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714883-END_seq_PB_LIG4_NT_control


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.004937



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2147177302147178501147177928204.505+
chr699335151993360139933541374.8571-
chr1279793230797940377979373752.4486-
chr812050653512050729412050678847.6801+
chrX14464537714464623914464565045.176-
chr215334677015334791515334732542.6015-
chrX43673902436741374367413142.0514-
chr1633820580338212013382093641.5632+
chr1311149111311149159011149137239.9207+
chr971843457185724718510139.6918-
Download the Full Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab