DNA Damage Atlas


GSM3714898-END_seq_ExoT_PB_LIG4_WASH_0_5h_REVERSIBILITY




Basic Information

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Sample ID:   

SRR8870092


Source Project ID:   

GSE129524

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

0.5hr (ETO washded out)


Treatment Dose:   

50uM


Genotype:   

Lig4-/-


In-situ Treatment:   

Exo T


Cell Phase:   

G1


Spike-in Intensity:   

57.3676


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714884-END_seq_ExoT_PB_LIG4_NT_control


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.002279



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12797934947979373779793737112.557-
chr1152089343152089543152089343111.328+
chr1088327338883276908832768399.742-
chr214717716714717856514717792894.2189+
chr1482527889825281268252808981.6847-
chr395772312957726299577262975.1918-
chr710442754210442823510442806673.3221-
chrX14464539014464604914464565070.9523-
chr337978604379790743797860868.5668+
chr381924387819245918192438767.7846+
Download the Full Peak List



Motif Analysis

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