DNA Damage Atlas


GSM3714899-END_seq_MEF_Smc3_PP_0_5h




Basic Information

Manual

Sample ID:   

SRR8870093


Source Project ID:   

GSE129524

Cell Type:   

MEF


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

0.5hr


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714910-END_seq_MEF_NT_re-used


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.025292



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389988411272106784339.68-
chr1621192323211934642119287125.3462+
chr351169936511710035117047225.1388-
chr214717720814717901414717792821.7704+
chr1727534344275353752753483821.4969-
chr910585735310585864410585807319.7167+
chr283792998381156838049618.0672-
chr116635981716636083816636043516.9723+
chr1011192475811192660911192574515.5139+
chr1311123753411123870711123814514.5744-
Download the Full Peak List



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab