DNA Damage Atlas


GSM3714900-END_seq_MEF_Smc3_FF_0_5h




Basic Information

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Sample ID:   

SRR8870094


Source Project ID:   

GSE129524

Cell Type:   

MEF


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

0.5hr


Treatment Dose:   

50uM


Genotype:   

Smc3f/f+CRE


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714910-END_seq_MEF_NT_re-used


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.103755



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389988411345106784769.97-
chr1111165239811165346011165300019.0893-
chr1621192324211934632119287115.9973+
chr912346145712346255512346206013.2682-
chr1010577412010577485410577464112.3562-
chr1210536763105379131053734412.0973-
chr214717746514717854014717792811.6052+
chr116636004216636070416636043510.6625+
chr392023274920240559202371610.404-
chr971845717185718718510110.3043-
Download the Full Peak List



Motif Analysis

Manual





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