DNA Damage Atlas


GSM3714901-END_seq_MEF_Wapl_FF_0_5h_control




Basic Information

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Sample ID:   

SRR8870095


Source Project ID:   

GSE129524

Cell Type:   

MEF


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

0.5hr


Treatment Dose:   

50uM


Genotype:   

Waplf/f


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714910-END_seq_MEF_NT_re-used


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.114001



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563891001710962106785868.51-
chr1621192271211932512119287129.6031+
chr214717721914717871414717792822.3959+
chr351169946511710355117047221.1965-
chr910585733210585860010585807320.7638+
chr283791278381124838049620.3482-
chr175925245759266307592588119.2249+
chr1111165240311165487411165300018.1872-
chr1111532205411532283611532243017.914-
chr1727534317275354422753484917.8688+
Download the Full Peak List



Motif Analysis

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