DNA Damage Atlas


GSM3714902-END_seq_MEF_Wapl_FF_CRE_0_5h




Basic Information

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Sample ID:   

SRR8870096


Source Project ID:   

GSE129524

Cell Type:   

MEF


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

0.5hr


Treatment Dose:   

50uM


Genotype:   

Waplf/f+CRE


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714910-END_seq_MEF_NT_re-used


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

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Ratio of (G-rich strand/C-rich strand): 0.020502



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL4563891005811354106785430-
chr1111165214411165354011165300035.1384-
chr1621192122211934672119287134.5879+
chr351169941511714075117047230.0056-
chr910585755010585869410585807326.7694+
chr283795488380931838049626.2846-
chr116635998616636102616636043525.5126+
chr1011192491211192632211192573521.8022+
chr392023363920238499202371619.6414-
chr387769931877709198777041019.1655+
Download the Full Peak List



Motif Analysis

Manual





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