DNA Damage Atlas


GSM3714903-END_seq_HCT116_0_5h




Basic Information

Manual

Sample ID:   

SRR8870097


Source Project ID:   

GSE129524

Cell Type:   

HCT116


Organism:   

Homo sapiens


Treatment:   

Etoposide


Treatment Time:   

0.5hr


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Cell Phase:   

G1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714905-END_seq_HCT116_NT_control


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.001045



Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr412503262712503386712503324718.7365-
chr1011717680311717782211717739913.775-
chr14369273943693544436930678.77861+
chr92111065221111716211111938.25665+
chr51137853031137863221137858287.67127+
chr31824010851824020471824016116.74215+
chr107874449378745046787448195.68927+
chr68392464683925461839251125.37477+
chr69797490197975394979751075.10535+
chr31925336081925346461925341825.08274-
Download the Full Peak List



Motif Analysis

Manual





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