Sample Detail

Basic Information

Manual

Sample ID:

SRR8870098

Source Project ID:

GSE129524

Cell Type:

HCT116

Organism:

Homo sapiens

Treatment:

Etoposide

Treatment Time:

0.5hr

Treatment Dose:

50uM

Genotype:

RAD21 AID

In-situ Treatment:

Exo VII + Exo T

Cell Phase:

Spike-in Intensity:

no spike in

Layout:

SINGLE

Instrument model:

Illumina NextSeq 550

Technique:

END-seq

Others:

control: GSM3714905-END_seq_HCT116_NT_control

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Telomere Analysis

Manual


Ratio of (G-rich strand/C-rich strand): 0.0006

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr4	125032636	125033759	125033247	6.42742	-
chr9	21110578	21111543	21111180	5.75998	-
chr10	49571463	49572719	49572161	4.53033	+
chr11	124538904	124539483	124539143	4.36775	-
chr3	182401338	182402169	182401611	4.34295	+
chr10	112113808	112114546	112114175	4.31911	-
chr13	81675444	81675674	81675463	4.12326	+
chr10	117176937	117179286	117177399	3.98117	-
chr8	120463585	120464953	120464288	3.96686	+
chr5	113785282	113786405	113785828	3.91744	+

Download the Full Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download