DNA Damage Atlas


GSM3714907-END_seq_aB_TOP2Bko_0_5h_rep2




Basic Information

Manual

Sample ID:   

SRR8870125


Source Project ID:   

GSE129524

Cell Type:   

Reconsituted B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

0.5hr


Treatment Dose:   

50uM


Genotype:   

TOP2B-/-


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714911-END_seq_aB12h_NT_re-used


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.644965



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrX143482539143483257143483102364.419-
chr698895639890632988996721.0745+
chr71044275541044285791044280689.87389-
chrY6453390364534118645341107.57958-
chr107229695872297784722971936.74937+
chr101060044231060052951060047094.65565+
chrX1532195891532200581532198233.77944-
chrUn_GL4563783352405133563.27206+
chr91239274961239312281239291053.20216-
chr184297542342976374429757892.91608+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr698895639890280988996729.386+
chr1010600470910600500410600470913.3911+
chr710442762210442854410442806810.5693-
chr91239278631239301901239291054.3397-
chrX1532196221532200581532198233.91271-
chr97195122071951715719514343.86801-
chr41460545141460577881460565243.75542-
chr113468165034682090346818983.5393-
chr172450225424502527245024763.45615-
chr78365030836599883652673.41541+
Download the Full Merged Peak List



Motif Analysis

Manual





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