DNA Damage Atlas


GSM3714909-END_seq_aB_WT_0_5h_rep2




Basic Information

Manual

Sample ID:   

SRR8870127


Source Project ID:   

GSE129524

Cell Type:   

Reconsituted B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

0.5hr


Treatment Dose:   

50uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T


Spike-in Intensity:   

2.07288


Spike-in percentage:   

2%


Layout:   

SINGLE


Instrument model:   

Illumina NextSeq 550


Technique:   

END-seq


Others:   

control: GSM3714911-END_seq_aB12h_NT_re-used


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.226553



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389987311287106781605.85-
chr351170112511710275117047231.3434-
chr653822535383380538276529.9898-
chr214717730214717923014717792626.3812-
chr1633820305338215003382092725.934+
chr1727032450270332172703299124.186+
chr1581077143810781238107767823.3667-
chr1493898546938990069389878119.5056-
chr1954875605488302548806317.9532-
chr743377856433788584337846517.1402-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_GL456389995011287106781527.74-
chr653822905383380538276532.0799-
chr214717730214717881914717792632.0566-
chr351170112511710275117047230.3031-
chr1633820354338214183382092729.4078+
chr1727032450270332172703299124.1586+
chr743378143433788584337846522.6155-
chr1581077143810781238107767822.2044-
chr1493898546938990069389878120.336-
chr1954875985488302548806318.7835-
Download the Full Merged Peak List



Motif Analysis

Manual





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