DNA Damage Atlas

GSM3714945-HTGTS_PB_ZFN_NT_NT_1_TOPO

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8870267


Source Project ID:   

GSE129528

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

NT


Genotype:   

LIG4-/-


In-situ Treatment:   

G1


Targeted break:   

Tcrβ enhancer on chromosome 6


Layout:   

SINGLE


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr66791380567914274679140358765.45-
chr66794183267942675679420528534.1-
chr67011708170117297701170817137.15+
chr67021556670215929702157277078.16+
chr67007385470074302700740396882.25+
chr66795395867954893679541586045.58-
chr66786138467861984678615845995.2-
chr67031485370315119703148535795.58+
chr66761024067610724676104405308.62-
chr66868032368681121686805235151.63-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr667913805679142746791403511117.4-
chr670073854700743027007403910667.7+
chr66795395867954646679541586000.89-
chr66794183267942675679420525016.41-
chr66786142167861949678615843966.61-
chr66868032368681121686805233565.34-
chr67031485370315119703148533491.51+
chr61206118371206120521206118372757.39+
chr67024019570240417702403952224.45-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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