DNA Damage Atlas


GSM3714948-HTGTS_PB_ZFN_ETO_NT_2_TOPO




Basic Information

Manual

Sample ID:   

SRR8870270


Source Project ID:   

GSE129528

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide


Treatment Time:   

2.5hrs


Treatment Dose:   

50uM


Genotype:   

LIG4-/-


In-situ Treatment:   

G1


Targeted break:   

Tcrβ enhancer on chromosome 6


Layout:   

SINGLE


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr66795387067954498679542063298.09-
chr67004386470044393700441293181.19-
chr67072208270722830707222142942.04+
chr66791322767914330679140741995.15+
chr66816409268164679681642921984.75-
chr63092133530921596309213911983.91+
chr67007372970076460700740521848.61+
chr67017157870171789701717781840.52-
chr61206115121206120201206117121783.76-
chr66761026067610799676104601681.17-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr66795387067954498679542062401.51-
chr66791376367914330679140742242.66+
chr67004386470044362700441292207.18-
chr63092133530921596309213911814.93+
chr66761026067610753676104601441.85-
chr61130473851130476601130475851095.59-
chr63876099738761267387609971037.38+
Download the Full Merged Peak List



Motif Analysis

Manual





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