DNA Damage Atlas


GSM3714950-HTGTS_PB_ZFN_IFN_ETO_TOPO




Basic Information

Manual

Sample ID:   

SRR8870272


Source Project ID:   

GSE129528

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Etoposide + mouse interferon beta


Treatment Time:   

2hrs + 2.5hrs


Treatment Dose:   

150mM + 100U/mL


Genotype:   

LIG4-/-


In-situ Treatment:   

G1


Targeted break:   

Tcrβ enhancer on chromosome 6


Layout:   

SINGLE


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr66791375167914289679139513544.6-
chr66901651169016823690165693291.17+
chr66812185668122080681218562619.5+
chr66873606768736619687362672125.97-
chr66761024167610466676104411955.89-
chr67037174570371973703719451930.16-
chr66868055968681077686807591699.14-
chr67072227070723878707224701550.85-
chr66795339567954914679535951545.14-
chr61212613981212618751212613981537.65+
Download the Full Peak List



Motif Analysis

Manual





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