DNA Damage Atlas


GSM3714952-HTGTS_PB_ZFN_DRB_ETO_TOPO




Basic Information

Manual

Sample ID:   

SRR8870274


Source Project ID:   

GSE129528

Cell Type:   

Abel pre-B cell


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

DRB + Etoposide


Treatment Time:   

2hrs + 2.5hrs


Treatment Dose:   

150mM + 50uM


Genotype:   

LIG4-/-


In-situ Treatment:   

G1


Targeted break:   

Tcrβ enhancer on chromosome 6


Layout:   

SINGLE


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr66901657369016817690165736042.55+
chr67072226370722905707224635167.23-
chr66795394267954752679541425005.62-
chr66791376967914361679140404981.02-
chr67011680070117301701170004414.32-
chr67004384070044343700440404396.77-
chr21747910017479303174791003631.48+
chr175634905356349280563492533247.54-
Download the Full Peak List



Motif Analysis

Manual





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