DNA Damage Atlas

GSM3724624-DNA-PKcs_PQR-PQR_-1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8910090


Source Project ID:   

GSE129895

Cell Type:   

anti-CD40 and Il4 activated B cell


Organism:   

Mus musculus


Strain:   

129


Genotype:   

DNA-PKcsPQR/PQR


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1211327309811327794611327549895464.1-
chr1211342604511343342311343027337525-
chr1211332805811333131511333053122655.8-
chr1211333840311334125611333971316966.8-
chr118231073282310933823107328810.73+
chr67072445770724659707246575844.74-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113274162113277716113275498105970-
chr1211342641811343159111343027349960-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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