DNA Damage Atlas

GSM3733982-DHJH_DFL16_1RSSUP_inv_JH1bait_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8946886


Source Project ID:   

GSE130216

Cell Type:   

v-Abl transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

4days


Treatment Dose:   

3uM


Genotype:   

DH-JH+/-, DFL16.1-RSS-UP inversion, Emu-Bcl2


Targeted break:   

JH1bait


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS V(D)J-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113430321113430824113430528687218+
chr12113480666113482737113482170249922+
chr12113450848113451077113450851121248+
chr1211347050311347091611347069435711.8+
chr1211346136811346158611346136919046.4+
chr1211344726411344931611344823711271.8+
chr1211357829511357872611357850411170.4+
chr1211342835911343011511342913510531.6+
chr121134745231134756361134754007232.27+
chr121134660261134665781134660275952.97+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113481955113482737113482170728862+
chr12113430321113430814113430528591176+
chr12113450848113451068113450851145238+
chr1211347539711347561711347540047315.1+
chr1211344803311344847711344823742796.9+
chr1211347050311347091611347069441535.2+
chr1211346136811346158611346136921963.5+
chr1211357829711357872611357850411767.1+
chr1211345671911345693111345672011366.6+
chr121134283591134300841134291359119.82+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab