DNA Damage Atlas

GSM3733985-DHJH_DFL16_1RSSDN_inv_JH1bait_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8946889


Source Project ID:   

GSE130216

Cell Type:   

v-Abl transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

4days


Treatment Dose:   

3uM


Genotype:   

DH-JH+/-, DFL16.1-RSS-DN inversion, Emu-Bcl2, RAG2 deficient


Targeted break:   

JH1bait


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS V(D)J-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113428334113430810113430528222585+
chr1211357827911357873411357850498018.3+
chr1211358806011358849311358826757751.3+
chr1211344738911344931511344823748207.8+
chr1211346136611346159211346136947245.2+
chr1211347049211347174911347069428307.9+
chr1211359723311359766811359744619567.1+
chr1211346602411346659911346602717649.7+
chr1211348495011348603211348581716757.4+
chr1211348086011348276011348106314751.7+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr121134302941134308101134305281045725+
chr1211357829511357873411357850488390.4+
chr1211358806011358849311358826745856.8+
chr1211344759011344931511344823745671.9+
chr1211347049311347124511347069441364.6+
chr1211346136611346159111346136936669.7+
chr1211345671911345694111345672020983.2+
chr1211348500811348603211348581717660.8+
chr1211359723311359766811359744617101.1+
chr1211346602611346657811346602715484.9+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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