DNA Damage Atlas

GSM3733987-DHJH_DFL16_1_inv_JH1bait_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR8946891


Source Project ID:   

GSE130216

Cell Type:   

v-Abl transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

4days


Treatment Dose:   

3uM


Genotype:   

DH-JH+/-, DFL16.1 inversion, Emu-Bcl2, RAG2 deficient


Targeted break:   

JH1bait


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS V(D)J-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113430314113430804113430528651543+
chr12113481060113482809113482173114752+
chr12113450647113451073113450851109900+
chr12113578287113578728113578504109362+
chr1211358805811358849611358826793139.8+
chr1211342795411342997511342913367925.6-
chr1211359723711359767711359744644955.2+
chr1211346136811346158311346136932932.9+
chr1211346602611346626811346602729571+
chr1211347049311347124111347069427926.4+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113430314113430798113430528771472+
chr12113481956113482808113482173287730+
chr12113450848113451068113450851219828+
chr12113470690113470927113470694103821+
chr1211342835111342982911342913381987.6-
chr1211357829711357872811357850465568.8+
chr1211358806211358848711358826747681.9+
chr1211361118111361140011361118423907.1+
chr1211345671811345693011345672022673.1+
chr1211359723811359766811359744621609.5+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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