DNA Damage Atlas

GSM3733991-DHJH_DFL16_1_inv_JH1bait_rep5

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR8946895


Source Project ID:   

GSE130216

Cell Type:   

v-Abl transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

4days


Treatment Dose:   

3uM


Genotype:   

DH-JH+/-, DFL16.1 inversion, Emu-Bcl2, RAG2 deficient


Targeted break:   

JH1bait


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS V(D)J-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113481894113482809113482173278877+
chr12113428345113431095113430528188027+
chr12113450650113451068113450851100094+
chr1211357829511357873711357850457266.1+
chr1211347050611347095311347069440041.2+
chr1211358805811358848711358826737105.2+
chr1211347539711347594911347540021708.4+
chr1211361118111361140211361118621137.4+
chr1211362550411362573111362550619460.3+
chr1211344759011344918511344823718065.9+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113430314113430798113430528771472+
chr12113481956113482808113482173287730+
chr12113450848113451068113450851219828+
chr12113470690113470927113470694103821+
chr1211357829711357872811357850465568.8+
chr1211358806211358848711358826747681.9+
chr1211361118111361140011361118623907.1+
chr1211345671811345693011345672022673.1+
chr1211359723811359766811359744621609.5+
chr1211346602611346624411346602721395.3+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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