DNA Damage Atlas

GSM3733995-JH1 _JH1bait_set2_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8946899


Source Project ID:   

GSE130216

Cell Type:   

v-Abl transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

4days


Treatment Dose:   

3uM


Genotype:   

DH-JH1+/-, Emu-Bcl2, RAG2 deficient


Targeted break:   

JH1bait


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS V(D)J-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113480878113482765113482170299796+
chr12113429989113431097113430528133658+
chr1211345084811345107911345085177033.2+
chr1211347049211347093811347069449350.5+
chr1211357829511357900511357850446349.2+
chr1211358805111358850911358826737256.3+
chr1211346136811346159311346136913638+
chr1211346602411346625411346602713279.1+
chr1211359710811359767211359744612000+
chr1211347624711347710811347687311374.6+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113481908113482765113482170741038+
chr12113429989113430892113430528166076+
chr1211357829511357873911357850476422.6+
chr1211345084811345107911345085176395+
chr1211358805711358849811358826739382.2+
chr1211347049411347093811347069437724.2+
chr1211346136811346159011346136915317.2+
chr1211344802911344931411344823714286.5+
chr1211346602611346625411346602713592.4+
chr1211359711311359767011359744612351.1+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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