DNA Damage Atlas

GSM3733997-JH1 _JH1bait_set2_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8946901


Source Project ID:   

GSE130216

Cell Type:   

v-Abl transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

4days


Treatment Dose:   

3uM


Genotype:   

DH-JH1+/-, Emu-Bcl2, RAG2 deficient


Targeted break:   

JH1bait


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS V(D)J-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113481062113486037113482170141638+
chr12113429661113430892113430528120530+
chr1211357828411357873911357850463143.1+
chr1211345065111345107911345085135642+
chr1211358805511358852011358826733083.8+
chr1211347049411347125611347069418060.8+
chr1211346136711346159211346136915052.3+
chr1211359711311359767011359744610151.1+
chr1211344759011344931411344823710138.7+
chr121136109771136114011136111868630.73+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113481908113482765113482170741038+
chr12113429989113430892113430528166076+
chr1211357829511357873911357850476422.6+
chr1211345084811345107911345085176395+
chr1211358805711358849811358826739382.2+
chr1211347049411347093811347069437724.2+
chr1211346136811346159011346136915317.2+
chr1211344802911344931411344823714286.5+
chr1211346602611346625411346602713592.4+
chr1211359711311359767011359744612351.1+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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