DNA Damage Atlas


GSM3734000-JH1_intervening_DH_inv_JH1bait_rep3




Basic Information

Manual

Sample ID:   

SRR8946904


Source Project ID:   

GSE130216

Cell Type:   

v-Abl transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

4days


Treatment Dose:   

3uM


Genotype:   

DH-JH1+/-, intervening DH inversion, Emu-Bcl2, RAG2 deficient


Targeted break:   

JH1bait


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS V(D)J-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113480185113484670113482170158495+
chr12113430308113431277113430528139636+
chr1211357829311357874111357850491709.1+
chr1211358804611358851311358826742176.5+
chr1211359711211359767511359744615466.7+
chr1211362528311362573211362550611470.1+
chr1211361097511361140711361118611390.1+
chr1211348494611348604011348581710621.5+
chr121137019231137023521137021247757.97+
chr121136854801136857081136854866732.34+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113480968113482815113482170367480+
chr12113430313113430810113430528306508+
chr1211357829311357873611357850496986.6+
chr1211358805611358849511358826750230.2+
chr1211359722511359767411359744621508.6+
chr1211362529711362572811362550613545.4+
chr1211361097811361140711361118612321.5+
chr1211348494611348604011348581710584.8+
chr121137019231137023461137021249283.31+
chr121136854801136857071136854868262.19+
Download the Full Merged Peak List



Motif Analysis

Manual





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