DNA Damage Atlas

GSM3734002-JH1_DQ52_inv_JH1bait_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8946906


Source Project ID:   

GSE130216

Cell Type:   

v-Abl transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

4days


Treatment Dose:   

3uM


Genotype:   

DH-JH1+/-, DQ52 inversion, Emu-Bcl2, RAG2 deficient


Targeted break:   

JH1bait


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS V(D)J-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113481061113482815113482170325515+
chr12113430289113430759113430538321412-
chr1211357829511357875411357850471833.6+
chr1211345065111345107511345085161953.3+
chr1211358805811358853211358826746151.5+
chr1211347050211347126111347069439753+
chr1211361118211361140711361118626666.9+
chr1211346136811346159911346136923364.4+
chr1211359724511359767111359744618667.2+
chr121136253031136257241136255069273.98+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113430289113430759113430538391976-
chr12113481061113482755113482170339972+
chr12113450848113451075113450851101956+
chr1211357829511357874211357850468643.6+
chr1211358806011358850311358826747299.6+
chr1211347050211347124511347069436301.9+
chr1211361118211361140711361118623302.6+
chr1211346136811346159111346136921002.7+
chr1211359724511359767111359744618094.5+
chr1211348496911348603411348581710018.1+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab