DNA Damage Atlas

GSM3734003-JH1_DQ52_inv_JH1bait_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR8946907


Source Project ID:   

GSE130216

Cell Type:   

v-Abl transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

4days


Treatment Dose:   

3uM


Genotype:   

DH-JH1+/-, DQ52 inversion, Emu-Bcl2, RAG2 deficient


Targeted break:   

JH1bait


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS V(D)J-seq


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113481060113482755113482170347226+
chr1211342986411343178511343053899037.6-
chr1211345084811345107711345085186986.3+
chr1211357829511357874211357850458347+
chr1211347443211347563711347540051929+
chr1211347049311347124511347069437413.3+
chr1211358806011358850311358826736893.4+
chr1211346136611346161211346136918039.9+
chr1211359723711359767911359744613582+
chr121136109771136114201136111869693.43+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113430289113430759113430538391976-
chr12113481061113482755113482170339972+
chr12113450848113451075113450851101956+
chr1211357829511357874211357850468643.6+
chr1211358806011358850311358826747299.6+
chr1211347050211347124511347069436301.9+
chr1211361118211361140711361118623302.6+
chr1211346136811346159111346136921002.7+
chr1211359724511359767111359744618094.5+
chr1211348496911348603411348581710018.1+
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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