DNA Damage Atlas


GSM3734025-dCas9Control_DQ52RSSDNbait_rep4




Basic Information

Manual

Sample ID:   

SRR8946929


Source Project ID:   

GSE130216

Cell Type:   

v-Abl transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

4days


Treatment Dose:   

3uM


Genotype:   

JH-del, dCas9 expressing, Emu-Bcl2, RAG2 deficient


Targeted break:   

DQ52-RSS-DN bait


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS V(D)J-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113224195113224696113224494415419+
chr12113312954113314962113313974107734+
chr12113578298113579001113578503102764-
chr1211358806211358848911358826683891.1-
chr1211322236411322308411322287670875.9+
chr1211323983711324024811324004260863.8+
chr1211332098111332152311332111360552.9+
chr1211323640511323706511323686338204.7+
chr1211344635211344663911344635334166.8+
chr1211342317711342438611342328525159.8+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113224197113224696113224494349418+
chr12113578298113578718113578503181485-
chr12113312954113314177113313974175988+
chr12113222672113223078113222876109480+
chr1211358806511358847211358826683234.9-
chr1211332098111332152311332111363531.3+
chr1211348196911348238311348217430155+
chr1211342317711342435911342328526218.7+
chr1211359724511359764711359744522005.5-
chr1211387889511387909611387909521238.1-
Download the Full Merged Peak List



Motif Analysis

Manual





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