DNA Damage Atlas


GSM3734028-dCas9Block_DQ52RSSDNbait_rep2




Basic Information

Manual

Sample ID:   

SRR8946932


Source Project ID:   

GSE130216

Cell Type:   

v-Abl transformed pro-B cell


Organism:   

Mus musculus


Treatment:   

STI-571


Treatment Time:   

4days


Treatment Dose:   

3uM


Genotype:   

JH-del,dCas9 expressing, Sg1-sgRNA expressing, Emu-Bcl2, RAG2 deficient


Targeted break:   

DQ52-RSS-DN bait


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

HTGTS V(D)J-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12113578300113579001113578503147863-
chr12113423083113424416113423285134969+
chr12113416120113416322113416121122300+
chr1211322419811322469511322449499415+
chr1211348196911348239311348216292465+
chr1211358806311358848711358826684865.1-
chr1211499090711499111011499110884659.2-
chr1211344635211344664111344635383624.8+
chr1211370192311370212411370212356110.4-
chr1211359724511359764911359744546527.2-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12113224198113224694113224494151111+
chr12113423177113424401113423285122864+
chr1211357830011357900111357850399644.2-
chr1211358806611358847011358826671570.9-
chr1211499090711499110911499110855330.6-
chr1211359724511359751711359744550481.8-
chr1211348196911348239311348216249603.5+
chr1211344803611344844511344823647636.7-
chr1211525793111525813211525813218398.9-
chr1211564774511564794511564794514790.8-
Download the Full Merged Peak List



Motif Analysis

Manual





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