Sample Detail

Basic Information

Manual

Sample ID:

SRR8946938

Source Project ID:

GSE130216

Cell Type:

v-Abl transformed pro-B cell

Organism:

Mus musculus

Treatment:

STI-571

Treatment Time:

4days

Treatment Dose:

3uM

Genotype:

JH-delta-dCas9, Emu-Bcl2, RAG2 deficient

Targeted break:

DQ52-RSS-DN bait

Layout:

PAIRED

Instrument model:

Illumina MiSeq

Technique:

HTGTS V(D)J-seq

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Peak Intensity

Top 10 Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr12	113224052	113224712	113224200	229978	+
chr12	113578293	113579001	113578503	110844	-
chr12	113312462	113314943	113313974	96030.6	+
chr12	113588061	113588504	113588266	74784.9	-
chr12	113239913	113240244	113240042	63887.1	+
chr12	113236831	113237063	113236863	57727.8	+
chr12	113309096	113311195	113309299	48694	+
chr12	113482134	113482385	113482162	42124.7	+
chr12	113320981	113322071	113321113	37292.2	+
chr12	113597239	113597623	113597445	36712.9	-

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr12	113224197	113224697	113224200	307944	+
chr12	113312463	113314263	113313974	123030	+
chr12	113578297	113579001	113578503	117394	-
chr12	113588061	113588475	113588266	83677.5	-
chr12	113239913	113240242	113240042	65530.6	+
chr12	113482134	113482385	113482162	47441.6	+
chr12	113597245	113597623	113597445	38293.1	-
chr12	113320981	113322071	113321113	35512.8	+
chr12	113878895	113879096	113879095	18852	-
chr12	113716469	113716671	113716669	18832	-

Download the Full Merged Peak List

Visualization

Manual

Profile

Heatmap

Download the matrix file

Motif Analysis

Manual

Download