DNA Damage Atlas

GSM3734894-IaD-i3CBEc_3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8950235


Source Project ID:   

GSE130265

Cell Type:   

CH12F3 murine lymphoma cell


Organism:   

Mus musculus


Treatment:   

cytokine stimulation


Genotype:   

Ialpha-delta-i3CBEc


Targeted break:   

target locus: three CBEs insertion downstream of Cg2a in Ia deleted cells


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

CSR-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1211342334611342762811342452792832.1-
chr1431614002316144573161403633484.5+
chr1211327996011328504111328084321534.8-
chr1262282177622825246228240713970.2-
chr193527632135276533352765219799.82-
chr126989448969894690698946896890.75-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1211342339411342762811342452790952.8-
chr1431614036316144573161403634167.9+
chr1211328008511328488011328084321410.7-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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