DNA Damage Atlas


GSM3734904-i3CBEc_1




Basic Information

Manual

Sample ID:   

SRR8950245


Source Project ID:   

GSE130265

Cell Type:   

CH12F3 murine lymphoma cell


Organism:   

Mus musculus


Treatment:   

cytokine stimulation


Genotype:   

i3CBEc


Targeted break:   

target locus: three CBEs insertion with the convergent orientation as 3'CBEs in non-coding IgH Sm-Sa deletion cells


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

CSR-HTGTS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1211325772411326504211326185054758.1-
chr1211342378911342813911342670346142.4-
chr143161403631614491316140366324.61+
chr121132823651132838021132825655006.43-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1211325997611326492311326185075489.8-
chr1211342422311342747211342670360245.5-
chr1431614036316143493161403613776.2+
Download the Full Merged Peak List



Motif Analysis

Manual





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