DNA Damage Atlas

GSM3734909-i3CBEc-3primeCBEsD_3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR8950250


Source Project ID:   

GSE130265

Cell Type:   

CH12F3 murine lymphoma cell


Organism:   

Mus musculus


Treatment:   

cytokine stimulation


Genotype:   

i3CBEc-3'CBEs-delta


Targeted break:   

target locus: 3'BCEs deletion in three CBEs inserted cells


Layout:   

PAIRED


Instrument model:   

Illumina MiSeq


Technique:   

CSR-HTGTS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1211325753011326537311326169161342-
chr1211342300311342678211342548459849.3+
chr1211322572411322943511322605717478.3-
chr1431614036316144823161435011381.5-
chr126228217562282382622823755449.43-
chr121133384881133386991133384885346.12+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1211342381011342678211342548475017.1+
chr1211325864211326515211326169167059.1-
chr1431614036316144603161435016704.6-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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